1VKC Transferase date May 11, 2004
title Putative Acetyl Transferase From Pyrococcus Furiosus
authors J.E.Habel, Z.J.Liu, W.Tempel, J.P.Rose, P.S.Brereton, M.Izumi, F. Jr, F.L.Poole Ii, C.Shah, F.J.Sugar, M.W.W.Adams, D.C.Richardson J.S.Richardson, B.C.Wang, Southeast Collaboratory For Struct Genomics (Secsg)
compound source
Molecule: Putative Acetyl Transferase
Chain: A, B
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: The Protein Was Cloned, Expressed And Purifi Secsg Pyrococcus Protein Production Group (M.W.W.Adams, P.S.Brereton, M.Izumi, F.E.Jenney Jr., H.- S.Lee, F.L. Pool C.Shah, F.Sugar) Under The Direction Of M.W.W.Adams.
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.919 67.387 49.414 90.00 91.55 90.00
method X-Ray Diffractionresolution 1.89 Å
ligand IOD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1vkc.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (1vkc.pdb2.gz) 50 Kb
  • Biological Unit Coordinates (1vkc.pdb3.gz) 25 Kb
  • Biological Unit Coordinates (1vkc.pdb4.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 1VKC
  • CSU: Contacts of Structural Units for 1VKC
  • Likely Quarternary Molecular Structure file(s) for 1VKC
  • Structure Factors (169 Kb)
  • Retrieve 1VKC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VKC from S2C, [Save to disk]
  • Re-refined 1vkc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VKC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VKC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VKC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vkca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1vkcb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vkc_B] [1vkc_A] [1vkc]
  • SWISS-PROT database: [Q8U4Q2]
  • Domain organization of [Q8U4Q2_PYRFU] by SWISSPFAM
  • Other resources with information on 1VKC
  • Community annotation for 1VKC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science