1VRM Crystal structure of the apbe protein (tm1553) from thermotoga maritima msb8 at 1.58 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
R_Free 0.191
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.58
ligand MPD, MRD, MSE, UNL enzyme
related structures by homologous chain: 1AX4

Primary referenceCrystal structure of the ApbE protein (TM1553) from Thermotoga maritima at 1.58 A resolution., Han GW, Sri Krishna S, Schwarzenbacher R, McMullan D, Ginalski K, Elsliger MA, Brittain SM, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod H, Canaves JM, Chiu HJ, DiDonato M, Grzechnik SK, Hale J, Hampton E, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Miller MD, Morse AT, Moy K, Nigoghossian E, Oommachen S, Ouyang J, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Wang X, West B, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, Proteins. 2006 Sep 1;64(4):1083-90. PMID:16779835
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (1vrm.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 1VRM
  • CSU: Contacts of Structural Units for 1VRM
  • Likely Quarternary Molecular Structure file(s) for 1VRM
  • Structure Factors (4648 Kb)
  • Retrieve 1VRM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VRM from S2C, [Save to disk]
  • Re-refined 1vrm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VRM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VRM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VRM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vrm_A] [1vrm]
  • SWISS-PROT database: [Q9X1N9]
  • Domain organization of [Q9X1N9_THEMA] by SWISSPFAM
  • Other resources with information on 1VRM
  • Community annotation for 1VRM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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