1VRY Membrane Protein date Jul 20, 2005
title Second And Third Transmembrane Domains Of The Alpha-1 Subunit Of Human Glycine Receptor
authors D.Ma, Z.Liu, L.Li, P.Tang, Y.Xu
compound source
Molecule: Glycine Receptor Alpha-1 Chain
Chain: A
Fragment: Second And Third Transmembrane Domains
Synonym: Glycine Receptor 48 Kda Subunit, Strychnine Binding Subunit;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Glra1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plyss
methodSolution NMR
note 1VRY supersedes 1ZHD
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Primary referenceStructure and dynamics of the second and third transmembrane domains of human glycine receptor(,)., Ma D, Liu Z, Li L, Tang P, Xu Y, Biochemistry 2005 Jun 21;44(24):8790-800. PMID:15952785
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (352 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1VRY
  • Retrieve 1VRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VRY from S2C, [Save to disk]
  • View 1VRY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VRY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VRY, from MSDmotif at EBI
  • Fold representative 1vry from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vry_A] [1vry]
  • SWISS-PROT database: [P23415]
  • Belongs to the neurotransmitter receptor, cys loop, ligand-gated ion channel (lic) family according to TCDB.
  • Domain organization of [GLRA1_HUMAN] by SWISSPFAM
  • Other resources with information on 1VRY
  • Community annotation for 1VRY at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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