1VRY Membrane Protein date Jul 20, 2005
title Second And Third Transmembrane Domains Of The Alpha-1 Subunit Of Human Glycine Receptor
authors D.Ma, Z.Liu, L.Li, P.Tang, Y.Xu
compound source
Molecule: Glycine Receptor Alpha-1 Chain
Chain: A
Fragment: Second And Third Transmembrane Domains
Synonym: Glycine Receptor 48 Kda Subunit, Strychnine Binding Subunit;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Glra1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plyss
methodSolution NMR
note 1VRY supersedes 1ZHD
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and dynamics of the second and third transmembrane domains of human glycine receptor(,)., Ma D, Liu Z, Li L, Tang P, Xu Y, Biochemistry 2005 Jun 21;44(24):8790-800. PMID:15952785
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (352 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1VRY
  • Retrieve 1VRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VRY from S2C, [Save to disk]
  • View 1VRY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VRY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VRY, from MSDmotif at EBI
  • Fold representative 1vry from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vry_A] [1vry]
  • SWISS-PROT database: [P23415]
  • Belongs to the neurotransmitter receptor, cys loop, ligand-gated ion channel (lic) family according to TCDB.
  • Domain organization of [GLRA1_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1VRY with the sequences similar proteins can be viewed for 1VRY's classification [GLRA1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [GLRA1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1VRY
  • Community annotation for 1VRY at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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