1VTL Transcription Dna date Dec 17, 1993
title Co-Crystal Structure Of Tbp Recognizing The Minor Groove Of Element
authors J.L.Kim, D.B.Nikolov, S.K.Burley
compound source
Molecule: Dna (5'-D(Gpcptpaptpapapapapgpgpgpcp
Chain: A, C
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'-D(Tpgpcpcpcptptptptpaptpapgp
Chain: B, D
Engineered: Yes

Synthetic: Yes

Molecule: Tata Binding Protein (Tbp)
Chain: E, F

Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
symmetry Space Group: P 1 21 1
R_factor 0.202 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.800 146.500 57.600 90.00 90.60 90.00
method X-Ray Diffractionresolution 2.25 Å
Gene
Ontology
ChainFunctionProcessComponent
F, E
  • obsolete general RNA polymer...


  • Primary referenceCo-crystal structure of TBP recognizing the minor groove of a TATA element., Kim JL, Nikolov DB, Burley SK, Nature. 1993 Oct 7;365(6446):520-7. PMID:8413605
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (1vtl.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (1vtl.pdb2.gz) 48 Kb
  • CSU: Contacts of Structural Units for 1VTL
  • Retrieve 1VTL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VTL from S2C, [Save to disk]
  • View 1VTL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VTL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VTL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vtl_B] [1vtl_D] [1vtl] [1vtl_A] [1vtl_C] [1vtl_F] [1vtl_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1VTL
  • Community annotation for 1VTL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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