1VTN Transcription Dna date Jan 06, 1995
title Co-Crystal Structure Of The Hnf-3fork Head Dna-Recognition Resembles Histone H5
authors K.L.Clark, E.D.Halay, E.Lai, S.K.Burley
compound source
Molecule: Dna (5'-D(Gpapcptpapapgptpcpapapcpc)
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: Dna (5'-D(Gpgptptpgpapcptptpapgptpc)
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Hnf-3fork Head Dna-Recognition Motif
Chain: C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
symmetry Space Group: P 31
R_factor 0.211 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.600 74.600 85.050 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceCo-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5., Clark KL, Halay ED, Lai E, Burley SK, Nature. 1993 Jul 29;364(6436):412-20. PMID:8332212
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1vtn.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 1VTN
  • CSU: Contacts of Structural Units for 1VTN
  • Retrieve 1VTN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VTN from S2C, [Save to disk]
    • View 1VTN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VTN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VTN, from MSDmotif at EBI
  • Fold representative 1vtn from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vtn_C] [1vtn] [1vtn_A] [1vtn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 1VTN: [FH ] by SMART
    • Other resources with information on 1VTN
  • Community annotation for 1VTN at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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