1W1F Sh3-Domain date Jun 21, 2004
title Sh3 Domain Of Human Lyn Tyrosine Kinase
authors F.Bauer, K.Schweimer, S.Hoffmann, P.Roesch, H.Sticht
compound source
Molecule: Tyrosine-Protein Kinase Lyn
Chain: A
Fragment: Sh3 Domain, Residues 60-122
Ec: 2.7.1.112
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pgex-6p-2
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.1.112 BRENDA
Primary referenceStructural characterization of Lyn-SH3 domain in complex with a herpesviral protein reveals an extended recognition motif that enhances binding affinity., Bauer F, Schweimer K, Meiselbach H, Hoffmann S, Rosch P, Sticht H, Protein Sci. 2005 Oct;14(10):2487-98. Epub 2005 Sep 9. PMID:16155203
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (327 Kb) [Save to disk]
  • Biological Unit Coordinates (1w1f.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 1W1F
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1W1F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W1F from S2C, [Save to disk]
    • View 1W1F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1W1F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W1F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w1f_A] [1w1f]
  • SWISS-PROT database: [P07948]
  • Domain organization of [LYN_HUMAN] by SWISSPFAM
  • Domain found in 1W1F: [SH3 ] by SMART
    • Other resources with information on 1W1F
  • Community annotation for 1W1F at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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