1W1H	Transferase	date	Jun 21, 2004
title	Crystal Structure Of The Pdk1 Pleckstrin Homology (Ph) Domai
authors	D.Komander, M.Deak, D.R.Alessi, D.M.F.Van Aalten
compound		source
Molecule: 3-Phosphoinositide Dependent Protein Kinase-1 Chain: A, B, C, D Fragment: Pleckstrin Homology Domain, Residues 409-556 Synonym: Hpdk1 Ec: 2.7.1.37 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Pgex
symmetry	Space Group: P 1 21 1	R_factor 0.156 R_Free 0.206
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.690 65.276 101.123 90.00 97.49 90.00
method	X-Ray Diffraction	resolution	1.45 Å
ligand	GOL, SO4	enzyme	Transferase E.C.2.7.1.37 BRENDA
related structures	by homologous chain: 1W1G
Primary reference	Structural insights into the regulation of PDK1 by phosphoinositides and inositol phosphates., Komander D, Fairservice A, Deak M, Kular GS, Prescott AR, Peter Downes C, Safrany ST, Alessi DR, van Aalten DM, EMBO J. 2004 Oct 13;23(20):3918-28. Epub 2004 Sep 30. PMID:15457207

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk] Biological Unit Coordinates (1w1h.pdb1.gz) 61 Kb Biological Unit Coordinates (1w1h.pdb2.gz) 62 Kb Biological Unit Coordinates (1w1h.pdb3.gz) 58 Kb Biological Unit Coordinates (1w1h.pdb4.gz) 55 Kb LPC: Ligand-Protein Contacts for 1W1H CSU: Contacts of Structural Units for 1W1H Likely Quarternary Molecular Structure file(s) for 1W1H Retrieve 1W1H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1W1H from S2C, [Save to disk]

View 1W1H in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1W1H

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1W1H 1W1HA 1W1HB 1W1HC 1W1HD from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1W1H, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1w1ha_, region A [Jmol] [rasmolscript] [script source]     - Domain d1w1hb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1w1hc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1w1hd_, region D [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1w1h] [1w1h_C] [1w1h_B] [1w1h_D] [1w1h_A] SWISS-PROT database: [O15530] Domain organization of [PDPK1_HUMAN] by SWISSPFAM

Other resources with information on 1W1H

Community annotation for 1W1H at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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