1W24 Cytoplasmic Protein date Jun 26, 2004
title Crystal Structure Of Human Vps29
authors D.Wang, M.Guo, M.Teng, L.Niu
compound source
Molecule: Vacuolar Protein Sorting Protein 29
Chain: A
Synonym: Vesicle Protein Sorting 29
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Brain
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet22b
symmetry Space Group: P 43 21 2
R_factor 0.218 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.871 53.871 124.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
related structures by homologous chain: 1Z2W, 1Z2X
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of human vacuolar protein sorting protein 29 reveals a phosphodiesterase/nuclease-like fold and two protein-protein interaction sites., Wang D, Guo M, Liang Z, Fan J, Zhu Z, Zang J, Zhu Z, Li X, Teng M, Niu L, Dong Y, Liu P, J Biol Chem. 2005 Jun 17;280(24):22962-7. Epub 2005 Mar 23. PMID:15788412
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1w24.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 1W24
  • Likely Quarternary Molecular Structure file(s) for 1W24
  • Structure Factors (158 Kb)
  • Retrieve 1W24 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W24 from S2C, [Save to disk]
  • Re-refined 1w24 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1W24 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1W24
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W24, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w24] [1w24_A]
  • SWISS-PROT database: [Q9UBQ0]
  • Domain organization of [VPS29_HUMAN] by SWISSPFAM
    • Other resources with information on 1W24
  • Community annotation for 1W24 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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