1W3W Coagulation date Jul 20, 2004
title The 2.1 Angstroem Resolution Structure Of Annexin A8
authors S.Rety, J.Sopkova-De Oliveira Santos, M.Renouard, A.Lewit-Bentl
compound source
Molecule: Annexin A8
Chain: A
Synonym: Annexin Viii, Vascular Anticoagulant-Beta, Vac-Bet
Engineered: Yes
Other_details: The N-Terminal 16 Residues Had Been Cleaved Proteolysis
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Placenta
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pgex
symmetry Space Group: P 1 21 1
R_factor 0.175 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.761 65.581 59.229 90.00 100.70 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand CA enzyme
related structures by homologous chain: 1W45
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of annexin A8 is similar to that of annexin A3., Rety S, Sopkova-de Oliveira Santos J, Dreyfuss L, Blondeau K, Hofbauerova K, Raguenes-Nicol C, Kerboeuf D, Renouard M, Russo-Marie F, Lewit-Bentley A, J Mol Biol. 2005 Feb 4;345(5):1131-9. Epub 2004 Dec 8. PMID:15644210
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1w3w.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 1W3W
  • CSU: Contacts of Structural Units for 1W3W
  • Likely Quarternary Molecular Structure file(s) for 1W3W
  • Structure Factors (337 Kb)
  • Retrieve 1W3W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W3W from S2C, [Save to disk]
  • Re-refined 1w3w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W3W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W3W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W3W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w3w_A] [1w3w]
  • SWISS-PROT database: [P13928]
  • Domain organization of [ANXA8_HUMAN] by SWISSPFAM
  • Domain found in 1W3W: [ANX ] by SMART
  • Other resources with information on 1W3W
  • Community annotation for 1W3W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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