OCA Atlas for 1W4M

1W4M

Signal Transduction

date

Jul 26, 2004

title

Structure Of The Human Pleckstrin Dep Domain By Multidimensional Nmr

authors

C.Civera, B.Simon, G.Stier, M.Sattler, M.J.Macias

compound

source

Molecule: Pleckstrin
Chain: A
Fragment: Human Dep Domain, Residues 121-223
Synonym: Human Pleckstrin Dep Domain, Platelet P47 Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet9d, Petm30

method

Solution NMR

related structures

by homologous chain: 1UHW

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Structure and dynamics of the human pleckstrin DEP domain: distinct molecular features of a novel DEP domain subfamily., Civera C, Simon B, Stier G, Sattler M, Macias MJ, Proteins. 2005 Feb 1;58(2):354-66. PMID:15573383

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk]

CSU: Contacts of Structural Units for 1W4M

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1W4M in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1W4M from S2C, [Save to disk]

View 1W4M in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1W4M

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1W4M, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1w4ma_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1w4m] [1w4m_A]

SWISS-PROT database: [P08567]

Domain organization of [PLEK_HUMAN] by SWISSPFAM

Domain found in 1W4M: [DEP ] by SMART

Other resources with information on 1W4M

Community annotation for 1W4M at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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