1W7X Hydrolase date Sep 14, 2004
title Factor7- 413 Complex
authors J.Ackermann, L.Alig, D.W.Banner, H.J.Boehm, K.Groebke-Zbinden, K.Hilpert, T.Lave, H.Kuehne, U.Obst-Sander, M.A.Riederer, M.Stahl, T.B.Tschopp, L.Weber, H.P.Wessel
compound source
Molecule: Blood Coagulation Factor Viia
Chain: H
Fragment: Factor Vii Heavy Chain, Residues 213-466
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa, Novoseven;
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Blood Coagulation Factor Viia
Chain: L
Fragment: Factor Vii Light Chain, Residues 151-204
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa, Novoseven;
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.169 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.000 95.000 115.850 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 413, CA, GOL, SO4 BindingDB enzyme Hydrolase E.C.3.4.21.21 BRENDA
Primary referenceSelective and orally bioavailable phenylglycine tissue factor/factor VIIa inhibitors., Zbinden KG, Obst-Sander U, Hilpert K, Kuhne H, Banner DW, Bohm HJ, Stahl M, Ackermann J, Alig L, Weber L, Wessel HP, Riederer MA, Tschopp TB, Lave T, Bioorg Med Chem Lett. 2005 Dec 1;15(23):5344-52. Epub 2005 Oct 4. PMID:16213138
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1w7x.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 1W7X
  • CSU: Contacts of Structural Units for 1W7X
  • Likely Quarternary Molecular Structure file(s) for 1W7X
  • Structure Factors (376 Kb)
  • Retrieve 1W7X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W7X from S2C, [Save to disk]
  • Re-refined 1w7x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W7X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W7X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1W7X, from MSDmotif at EBI
  • Fold representative 1w7x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w7x_H] [1w7x_L] [1w7x]
  • SWISS-PROT database: [P08709]
  • Domain organization of [FA7_HUMAN] by SWISSPFAM
  • Domains found in 1W7X: [EGF] [Tryp_SPc ] by SMART
  • Alignments of the sequence of 1W7X with the sequences similar proteins can be viewed for 1W7X's classification [FA7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1W7X
  • Community annotation for 1W7X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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