1W8B Hydrolase date Sep 17, 2004
title Factor7 - 413 Complex
authors J.Ackermann, L.Alig, D.W.Banner, H.J.Boehm, K.Groebke-Zbinden, K.Hilpert, T.Lave, H.Kuehne, U.Obst-Sander, M.A.Riederer, M.Stahl, T.B.Tschopp, L.Weber, H.P.Wessel
compound source
Molecule: Blood Coagulation Factor Viia
Chain: H
Fragment: Factor Vii Heavy Chain, Residues 213-466
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa, Novoseven;
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Blood Coagulation Factor Viia
Chain: L
Fragment: Factor Vii Light Chain, Residues 148-204
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa, Novoseven;
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.194 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.846 82.846 147.768 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand 413, CA BindingDB enzyme Hydrolase E.C.3.4.21.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H


Primary referenceSelective and orally bioavailable phenylglycine tissue factor/factor VIIa inhibitors., Zbinden KG, Obst-Sander U, Hilpert K, Kuhne H, Banner DW, Bohm HJ, Stahl M, Ackermann J, Alig L, Weber L, Wessel HP, Riederer MA, Tschopp TB, Lave T, Bioorg Med Chem Lett. 2005 Dec 1;15(23):5344-52. Epub 2005 Oct 4. PMID:16213138
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1w8b.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1W8B
  • CSU: Contacts of Structural Units for 1W8B
  • Likely Quarternary Molecular Structure file(s) for 1W8B
  • Structure Factors (77 Kb)
  • Retrieve 1W8B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W8B from S2C, [Save to disk]
  • Re-refined 1w8b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W8B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W8B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1W8B, from MSDmotif at EBI
  • Fold representative 1w8b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w8b] [1w8b_L] [1w8b_H]
  • SWISS-PROT database: [P08709]
  • Domain organization of [FA7_HUMAN] by SWISSPFAM
  • Domains found in 1W8B: [EGF] [Tryp_SPc ] by SMART
  • Other resources with information on 1W8B
  • Community annotation for 1W8B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science