1W8C Transferase date Sep 20, 2004
title Co-Crystal Structure Of 6-Cyclohexylmethoxy-8-Isopropyl-9h-P Ylamine And Monomeric Cdk2
authors D.J.Pratt, J.A.Endicott, M.E.M.Noble
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: Cyclin Dependent Kinase 2, P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.505 71.935 72.091 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand ACE, CSD, N69 enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference8-Substituted O6-Cyclohexylmethylguanine CDK2 Inhibitors; Using Structure-Based Inhibitor Design to Optimise an Alternative Binding Mode., Carbain B, Paterson DJ, Anscombe E, Campbell-Dexter A, Cano C, Echalier A, Endicott J, Golding BT, Haggerty K, Hardcastle IR, Jewsbury PJ, Newell DR, Noble M, Roche C, Wang LZ, Griffin RJ, J Med Chem. 2013 Dec 4. PMID:24304238
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1w8c.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1W8C
  • CSU: Contacts of Structural Units for 1W8C
  • Likely Quarternary Molecular Structure file(s) for 1W8C
  • Structure Factors (125 Kb)
  • Retrieve 1W8C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W8C from S2C, [Save to disk]
  • Re-refined 1w8c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W8C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W8C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W8C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w8c] [1w8c_A]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1W8C: [S_TKc ] by SMART
  • Other resources with information on 1W8C
  • Community annotation for 1W8C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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