1W8F	Sugar Binding Protein	date	Sep 21, 2004
title	Pseudomonas Aeruginosa Lectin II (Pa-Iil)Complexed With Lact Fucopentaose V(Lnpfv)
authors	S.Perret, C.Sabin, C.Dumon, M.Budova, C.Gautier, O.Galanina, S.Ili N.Bovin, M.Nicaise, M.Desmadril, N.Gilboa-Garber, M.Wimmerova, E.P.Mitchell, A.Imberty
compound		source
Molecule: Pseudomonas Aeruginosa Lectin II Chain: A, B, C, D Synonym: Pa-Iil Engineered: Yes Other_details: Each Monomer Contains Two Close Calcium Cati Mediate The Binding Of The Saccharide		Organism_scientific: Pseudomonas Aeruginosa Organism_taxid: 287 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet25pa2l
symmetry	Space Group: P 1	R_factor 0.105 R_Free 0.123
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.015 48.352 52.472 85.35 80.05 65.60
method	X-Ray Diffraction	resolution	1.05 Å
ligand	BGC, CA, FUC, GAL, GOL, NAG, SO4	enzyme
related structures	by homologous chain: 1OXC, 1UZV
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural basis for the interaction between human milk oligosaccharides and the bacterial lectin PA-IIL of Pseudomonas aeruginosa., Perret S, Sabin C, Dumon C, Pokorna M, Gautier C, Galanina O, Ilia S, Bovin N, Nicaise M, Desmadril M, Gilboa-Garber N, Wimmerova M, Mitchell EP, Imberty A, Biochem J. 2005 Jul 15;389(Pt 2):325-32. PMID:15790314

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk] Biological Unit Coordinates (1w8f.pdb1.gz) 174 Kb LPC: Ligand-Protein Contacts for 1W8F CSU: Contacts of Structural Units for 1W8F Likely Quarternary Molecular Structure file(s) for 1W8F Structure Factors (2303 Kb) Retrieve 1W8F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1W8F from S2C, [Save to disk] Re-refined 1w8f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1W8F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1W8F

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1W8F, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1w8f_A] [1w8f_C] [1w8f_B] [1w8f] [1w8f_D] SWISS-PROT database: [Q9HYN5] Domain organization of [Q9HYN5_PSEAE] by SWISSPFAM

Other resources with information on 1W8F

Community annotation for 1W8F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---