1W8S Lyase date Sep 27, 2004
title The Mechanism Of The Schiff Base Forming Fructose-1,6-Bispho Aldolase: Structural Analysis Of Reaction Intermediates
authors E.Lorentzen, R.Hensel, B.Siebers, E.Pohl
compound source
Molecule: Fructose-Bisphosphate Aldolase Class I
Chain: A, B, C, D, E, F, G, H, I, J
Synonym: Fbp Aldolase
Ec: 4.1.2.13
Engineered: Yes
Mutation: Yes
Other_details: Cyclic Fbp Bound
Organism_scientific: Thermoproteus Tenax
Organism_taxid: 2271
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.149 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.500 157.300 101.200 90.00 107.90 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand FBP enzyme Lyase E.C.4.1.2.13 BRENDA
related structures by homologous chain: 1OJX
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Primary referenceMechanism of the Schiff base forming fructose-1,6-bisphosphate aldolase: structural analysis of reaction intermediates., Lorentzen E, Siebers B, Hensel R, Pohl E, Biochemistry. 2005 Mar 22;44(11):4222-9. PMID:15766250
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (412 Kb) [Save to disk]
  • Biological Unit Coordinates (1w8s.pdb1.gz) 205 Kb
  • Biological Unit Coordinates (1w8s.pdb2.gz) 206 Kb
  • LPC: Ligand-Protein Contacts for 1W8S
  • CSU: Contacts of Structural Units for 1W8S
  • Likely Quarternary Molecular Structure file(s) for 1W8S
  • Structure Factors (2748 Kb)
  • Retrieve 1W8S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W8S from S2C, [Save to disk]
  • Re-refined 1w8s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W8S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W8S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W8S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w8s_C] [1w8s_A] [1w8s_E] [1w8s] [1w8s_D] [1w8s_G] [1w8s_F] [1w8s_B] [1w8s_I] [1w8s_J] [1w8s_H]
  • SWISS-PROT database: [P58315]
  • Domain organization of [ALF1_THETE] by SWISSPFAM
  • Domain found in 1W8S: [DeoC ] by SMART
  • Other resources with information on 1W8S
  • Community annotation for 1W8S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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