1W9D Hydrolase date Oct 08, 2004
title S. Alba Myrosinase In Complex With S-Ethyl Phenylacetothiohy O-Sulfate
authors A.Bourderioux, M.Lefoix, D.Gueyrard, A.Tatibouet, S.Cottaz, S.Arz W.P.Burmeister, P.Rollin
compound source
Molecule: Glycosidase
Chain: M
Synonym: Myrosinase
Ec: 3.2.3.1
Organism_scientific: Sinapis Alba
Organism_common: White Mustard
Organism_taxid: 3728
Strain: Emergo
Organ: Seed
Tissue: Myrosin Grains
symmetry Space Group: C 2 2 21
R_factor 0.189 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.300 137.200 80.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand BMA, FUC, GOL, MAN, NAG, SEH, SO4, XYP, ZN enzyme Hydrolase E.C.3.2.3.1 BRENDA
related structures by homologous chain: 1E6X, 1MYR
Gene
Ontology
ChainFunctionProcessComponent
M


Primary referenceThe glucosinolate-myrosinase system. New insights into enzyme-substrate interactions by use of simplified inhibitors., Bourderioux A, Lefoix M, Gueyrard D, Tatibouet A, Cottaz S, Arzt S, Burmeister WP, Rollin P, Org Biomol Chem. 2005 May 21;3(10):1872-9. Epub 2005 Apr 14. PMID:15889170
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (1w9d.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 1W9D
  • CSU: Contacts of Structural Units for 1W9D
  • Likely Quarternary Molecular Structure file(s) for 1W9D
  • Structure Factors (1112 Kb)
  • Retrieve 1W9D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W9D from S2C, [Save to disk]
  • Re-refined 1w9d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W9D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W9D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W9D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w9d_M] [1w9d]
  • SWISS-PROT database: [P29736]
  • Domain organization of [MYRA_SINAL] by SWISSPFAM
  • Other resources with information on 1W9D
  • Community annotation for 1W9D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science