1WA7 Sh3 Domain date Oct 25, 2004
title Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A Herpesviral Ligand
authors F.Bauer, K.Schweimer, S.Hoffmann, P.Roesch, H.Sticht
compound source
Molecule: Tyrosine-Protein Kinase Lyn
Chain: A
Fragment: Sh3 Domain, Residues 39-101
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Intracellular
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pgex-6p-2

Molecule: Hypothetical 28.7 Kda Protein In Dhfr 3'Region (Orf1);
Chain: B
Fragment: Tyrosine Kinase Interaction Protein, Residues 170-191;
Synonym: Tip
Engineered: Yes

Organism_scientific: Saimiriine Herpesvirus 2
Organism_common: Human Saimiriine Herpesvirus 2
Organism_taxid: 10381
Strain: 488
Variant: Subgroup C
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pgex-4t-1
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.1.112 BRENDA
Primary referenceStructural investigation of the binding of a herpesviral protein to the SH3 domain of tyrosine kinase Lck., Schweimer K, Hoffmann S, Bauer F, Friedrich U, Kardinal C, Feller SM, Biesinger B, Sticht H, Biochemistry. 2002 Apr 23;41(16):5120-30. PMID:11955060
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (430 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1WA7
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1WA7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WA7 from S2C, [Save to disk]
  • View 1WA7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WA7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WA7, from MSDmotif at EBI
  • Fold representative 1wa7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wa7_B] [1wa7_A] [1wa7]
  • SWISS-PROT database: [P07948] [P22575]
  • Domain organization of [LYN_HUMAN] [TIP_SHV2C] by SWISSPFAM
  • Domain found in 1WA7: [SH3 ] by SMART
  • Alignments of the sequence of 1WA7 with the sequences similar proteins can be viewed for 1WA7's classification [LYN_HUMAN] [TIP_SHV2C] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [LYN_HUMAN] [TIP_SHV2C] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1WA7
  • Community annotation for 1WA7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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