1WA7	Sh3 Domain	date	Oct 25, 2004
title	Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A Herpesviral Ligand
authors	F.Bauer, K.Schweimer, S.Hoffmann, P.Roesch, H.Sticht
compound		source
Molecule: Tyrosine-Protein Kinase Lyn Chain: A Fragment: Sh3 Domain, Residues 39-101 Ec: 2.7.1.112 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell: Intracellular Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Pgex-6p-2
Molecule: Hypothetical 28.7 Kda Protein In Dhfr 3'Region (Orf1); Chain: B Fragment: Tyrosine Kinase Interaction Protein, Residues 170-191; Synonym: Tip Engineered: Yes		Organism_scientific: Saimiriine Herpesvirus 2 Organism_common: Human Saimiriine Herpesvirus 2 Organism_taxid: 10381 Strain: 488 Variant: Subgroup C Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Pgex-4t-1
method	Solution NMR
ligand		enzyme	Transferase E.C.2.7.1.112 BRENDA
Primary reference	Structural investigation of the binding of a herpesviral protein to the SH3 domain of tyrosine kinase Lck., Schweimer K, Hoffmann S, Bauer F, Friedrich U, Kardinal C, Feller SM, Biesinger B, Sticht H, Biochemistry. 2002 Apr 23;41(16):5120-30. PMID:11955060

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (430 Kb) [Save to disk] CSU: Contacts of Structural Units for 1WA7 Experimental data, such as chemical shifts, at BioMagResBank (BMRB) NMR Restraints Grid from BioMagResBank (BMRB) Retrieve 1WA7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WA7 from S2C, [Save to disk]

View 1WA7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1WA7

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1WA7, from MSDmotif at EBI Fold representative 1wa7 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wa7_A] [1wa7_B] SWISS-PROT database: [P07948] [P22575] Domain organization of [LYN_HUMAN] [TIP_SHV2C] by SWISSPFAM Domain found in 1WA7: [SH3 ] by SMART Alignments of the sequence of 1WA7 with the sequences similar proteins can be viewed for 1WA7's classification [LYN_HUMAN] [TIP_SHV2C] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [LYN_HUMAN] [TIP_SHV2C] at ProtoMap. Click on the Cluster number.

Other resources with information on 1WA7

Community annotation for 1WA7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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