1WCE Virus date Nov 12, 2004
title Crystal Structure Of The T13 Ibdv Viral Particle Reveals A M Link In Icosahedral Viruses Evolution
authors F.Coulibaly, C.Chevalier, I.Gutsche, J.Pous, S.Bressanelli, J.Nav B.Delmas, F.A.Rey
compound source
Molecule: Major Structural Protein Vp2
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M
Fragment: Residues 1-441
Synonym: Ibdv Vp2 Subviral Particle
Organism_scientific: Infectious Bursal Disease Virus
Organism_common: Ibdv
Organism_taxid: 10995
Strain: Ct
Other_details: Vaccine Strain (Merial)
symmetry Space Group: P 1 21 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
854.010 692.230 792.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 7.00 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, M, C, D, I, G, L


Primary referenceThe birnavirus crystal structure reveals structural relationships among icosahedral viruses., Coulibaly F, Chevalier C, Gutsche I, Pous J, Navaza J, Bressanelli S, Delmas B, Rey FA, Cell. 2005 Mar 25;120(6):761-72. PMID:15797378
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (1wce.pdb1.gz) 6761 Kb
  • CSU: Contacts of Structural Units for 1WCE
  • Likely Quarternary Molecular Structure file(s) for 1WCE
  • Structure Factors (10469 Kb)
  • Retrieve 1WCE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WCE from S2C, [Save to disk]
  • View 1WCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WCE
  • VIPERdb: visual, structural and computational analysis of 1WCE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WCE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wce_H] [1wce_E] [1wce_B] [1wce_G] [1wce_J] [1wce_D] [1wce_L] [1wce_M] [1wce_C] [1wce_A] [1wce_I] [1wce_K] [1wce_F] [1wce]
  • SWISS-PROT database: [P15480]
  • Domain organization of [POLS_IBDVC] by SWISSPFAM
  • Other resources with information on 1WCE
  • Community annotation for 1WCE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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