1WD1 Structural Protein Dna date May 10, 2004
title Crystal Structures Of The Hyperthermophilic Chromosomal Prot In Complex With Dna Decamers
authors T.P.Ko, H.M.Chu, C.Y.Chen, C.C.Chou, A.H.J.Wang
compound source
Molecule: 5'-D(Cpcptpapcpgptpapgpg)-3'
Chain: B, C
Engineered: Yes
 Synthetic: Yes

Molecule: Dna-Binding Proteins 7a7b7d
Chain: A
Synonym: Sac7d Chromosomal Protein, 7 Kda Dna-Binding Prote Sac7a, Sac7b, Sac7d;
Engineered: Yes
Organism_scientific: Sulfolobus Acidocaldarius
Organism_taxid: 2285
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-3b
symmetry Space Group: P 21 21 21
R_factor 0.248 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.634 46.841 53.330 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 1SAP, 1WTW
Gene
Ontology
ChainFunctionProcessComponent
A
  • endoribonuclease activity


    • Primary referenceStructures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers., Ko TP, Chu HM, Chen CY, Chou CC, Wang AH, Acta Crystallogr D Biol Crystallogr 2004 Aug;60(Pt 8):1381-7. Epub 2004, Jul 21. PMID:15272160
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (1wd1.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 1WD1
  • Likely Quarternary Molecular Structure file(s) for 1WD1
  • Structure Factors (57 Kb)
  • Retrieve 1WD1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WD1 from S2C, [Save to disk]
  • Re-refined 1wd1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1WD1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WD1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WD1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wd1a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wd1_A] [1wd1] [1wd1_C] [1wd1_B]
  • SWISS-PROT database: [P13123]
  • Domain organization of [DN71_SULAC] by SWISSPFAM
    • Other resources with information on 1WD1
  • Community annotation for 1WD1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science