1WDT Structural Genomics, Unknown Function date May 17, 2004
title Crystal Structure Of Ttk003000868 From Thermus Thermophilus
authors H.Wang, C.Takemoto-Hori, K.Murayama, S.Sekine, T.Terada, M.Shirou S.Kuramitsu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Elongation Factor G Homolog
Chain: A
Synonym: Ef-G-2
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.372 56.293 91.825 90.00 104.33 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (1wdt.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 1WDT
  • CSU: Contacts of Structural Units for 1WDT
  • Likely Quarternary Molecular Structure file(s) for 1WDT
  • Retrieve 1WDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WDT from S2C, [Save to disk]
    • View 1WDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WDT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WDT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wdt_A] [1wdt]
  • SWISS-PROT database: [Q5SI76]
  • Domain organization of [Q5SI76_THET8] by SWISSPFAM
  • Domains found in 1WDT: [EFG_C] [EFG_IV ] by SMART
    • Other resources with information on 1WDT
  • Community annotation for 1WDT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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