1WDV		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MSE	enzyme
Gene Ontology	Chain Function Process Component A, B aminoacyl-tRNA editing activ...
Primary reference	Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 A resolution., Murayama K, Kato-Murayama M, Katsura K, Uchikubo-Kamo T, Yamaguchi-Hirafuji M, Kawazoe M, Akasaka R, Hanawa-Suetsugu K, Hori-Takemoto C, Terada T, Shirouzu M, Yokoyama S, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2005 Jan 1;61(Pt, 1):26-9. Epub 2004 Dec 24. PMID:16508081

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (1wdv.pdb1.gz) 29 Kb Biological Unit Coordinates (1wdv.pdb2.gz) 28 Kb LPC: Ligand-Protein Contacts for 1WDV CSU: Contacts of Structural Units for 1WDV Likely Quarternary Molecular Structure file(s) for 1WDV Structure Factors (238 Kb) Retrieve 1WDV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WDV from S2C, [Save to disk] Re-refined 1wdv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1WDV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wdv_B] [1wdv] [1wdv_A] SWISS-PROT database: [Q9Y8U3]

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---