1WF0 Rna Binding Protein date May 25, 2004
title Solution Structure Of Rrm Domain In Tar Dna-Binding Protein- 43
authors F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Tar Dna-Binding Protein-43
Chain: A
Fragment: Rrm Domain
Synonym: Tdp-43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hep00195
Expression_system_vector_type: Plasmid
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (429 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1WF0
  • Retrieve 1WF0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WF0 from S2C, [Save to disk]
  • View 1WF0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WF0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WF0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wf0a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1wf0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wf0] [1wf0_A]
  • SWISS-PROT database: [Q13148]
  • Domain organization of [TADBP_HUMAN] by SWISSPFAM
  • Domain found in 1WF0: [RRM ] by SMART
  • Other resources with information on 1WF0
  • Community annotation for 1WF0 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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