1WFM Endocytosis Exocytosis date May 26, 2004
title The First C2 Domain Of Human Synaptotagmin Xiii
authors T.Nagashima, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Synaptotagmin Xiii
Chain: A
Fragment: C2 Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Fh02770
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040113-87
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (681 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1WFM
  • Original NMR restraints for 1WFM from PDB
  • Retrieve 1WFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WFM from S2C, [Save to disk]
  • View 1WFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WFM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WFM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wfma_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1wfm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wfm] [1wfm_A]
  • SWISS-PROT database: [Q7L8C5]
  • Domain organization of [SYT13_HUMAN] by SWISSPFAM
  • Other resources with information on 1WFM
  • Community annotation for 1WFM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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