1WGU Protein Binding date May 28, 2004
title Solution Structure Of The C-Terminal Phosphotyrosine Interac Domain Of Apbb2 From Mouse
authors H.Li, F.Hayashi, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken S Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Amyloid Beta (A4) Precursor Protein-Binding, Fami Member 2;
Chain: A
Fragment: Phosphotyrosine-Interaction Domain
Synonym: Apbb2
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Riken Cdna 1200015i07
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P031020-58
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the C-terminal phosphotyrosine interaction domain of Fe65L1 complexed with the cytoplasmic tail of amyloid precursor protein reveals a novel peptide binding mode., Li H, Koshiba S, Hayashi F, Tochio N, Tomizawa T, Kasai T, Yabuki T, Motoda Y, Harada T, Watanabe S, Inoue M, Hayashizaki Y, Tanaka A, Kigawa T, Yokoyama S, J Biol Chem. 2008 Oct 3;283(40):27165-78. Epub 2008 Jul 23. PMID:18650440
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (676 Kb) [Save to disk]
  • Biological Unit Coordinates (1wgu.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 1WGU
  • Original NMR restraints for 1WGU from PDB
  • Retrieve 1WGU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WGU from S2C, [Save to disk]
    • View 1WGU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WGU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WGU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wgua_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wgu_A] [1wgu]
  • SWISS-PROT database: [Q9DBR4]
  • Domain organization of [APBB2_MOUSE] by SWISSPFAM
  • Domain found in 1WGU: [PTB ] by SMART
    • Other resources with information on 1WGU
  • Community annotation for 1WGU at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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