1WI3 Dna Binding Protein date May 28, 2004
title Solution Structure Of The Homeodomain Of Kiaa1034 Protein
authors K.Izumi, M.Yoshida, F.Hayashi, R.Hatta, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Dna-Binding Protein Satb2
Chain: A
Fragment: Homeodomain
Synonym: Kiaa1034 Protein, Special At-Rich Sequence- Binding Protein 2, Two Cut Domains-Containing Homeodomain Protein, Satb2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Fh00753
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040126-83
Other_details: Cell Free Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (367 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1WI3
  • Retrieve 1WI3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WI3 from S2C, [Save to disk]
  • View 1WI3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WI3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WI3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wi3a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1wi3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wi3] [1wi3_A]
  • SWISS-PROT database: [Q9UPW6]
  • Domain organization of [SATB2_HUMAN] by SWISSPFAM
  • Domain found in 1WI3: [HOX ] by SMART
  • Other resources with information on 1WI3
  • Community annotation for 1WI3 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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