1WI5 Structural Genomics, Unknown Function date May 28, 2004
title Solution Structure Of The S1 Rna Binding Domain From Human Hypothetical Protein Baa11502
authors S.Suzuki, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Rrp5 Protein Homolog
Chain: A
Fragment: S1 Domain
Synonym: Programmed Cell Death Protein 11
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Riken Cdna Ha02717
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030512-28
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (592 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1WI5
  • Original NMR restraints for 1WI5 from PDB
  • Retrieve 1WI5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WI5 from S2C, [Save to disk]
  • View 1WI5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WI5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WI5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wi5a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1wi5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wi5_A] [1wi5]
  • SWISS-PROT database: [Q14690]
  • Domain organization of [RRP5_HUMAN] by SWISSPFAM
  • Domain found in 1WI5: [S1 ] by SMART
  • Other resources with information on 1WI5
  • Community annotation for 1WI5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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