1WM5 Hormone Growth Factor date Jul 03, 2004
title Crystal Structure Of The N-Terminal Tpr Domain (1-203) Of P6
authors F.Inagaki, N.N.Suzuki
compound source
Molecule: Neutrophil Cytosol Factor 2
Chain: A
Fragment: Tpr Domain
Synonym: Ncf-2, Neutrophil Nadph Oxidase Factor 2, 67 Kda N Oxidase Factor, P67-Phox, Noxa2;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.185 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.671 121.671 45.709 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1wm5.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1WM5
  • CSU: Contacts of Structural Units for 1WM5
  • Likely Quarternary Molecular Structure file(s) for 1WM5
  • Structure Factors (178 Kb)
  • Retrieve 1WM5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WM5 from S2C, [Save to disk]
  • Re-refined 1wm5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1WM5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WM5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WM5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wm5] [1wm5_A]
  • SWISS-PROT database: [P19878]
  • Domain organization of [NCF2_HUMAN] by SWISSPFAM
  • Domain found in 1WM5: [TPR ] by SMART
    • Other resources with information on 1WM5
  • Community annotation for 1WM5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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