1WMA Oxidoreductase date Jul 06, 2004
title Crystal Structure Of Human Cbr1 In Complex With Hydroxy-Pp
authors D.Rauh, R.Bateman, K.M.Shokat
compound source
Molecule: Carbonyl Reductase [Nadph] 1
Chain: A
Ec: 1.1.1.184
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11a
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.450 55.350 95.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.24 Å
ligand AB3, NDP, P33, PE5, SO4 enzyme Oxidoreductase E.C.1.1.1.184 BRENDA
note 1WMA is a representative structure
related structures by homologous chain: 1N5D
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAn Unbiased Cell Morphology-Based Screen for New, Biologically Active Small Molecules., Tanaka M, Bateman R, Rauh D, Vaisberg E, Ramachandani S, Zhang C, Hansen KC, Burlingame AL, Trautman JK, Shokat KM, Adams CL, PLoS Biol 2005 Apr 5;3(5):e128. PMID:15799708
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (1wma.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 1WMA
  • CSU: Contacts of Structural Units for 1WMA
  • Likely Quarternary Molecular Structure file(s) for 1WMA
  • Structure Factors (570 Kb)
  • Retrieve 1WMA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WMA from S2C, [Save to disk]
  • Re-refined 1wma structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WMA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WMA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WMA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wma] [1wma_A]
  • SWISS-PROT database: [P16152]
  • Domain organization of [CBR1_HUMAN] by SWISSPFAM
  • Other resources with information on 1WMA
  • Community annotation for 1WMA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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