1WMK Transferase date Jul 11, 2004
title Human Death-Associated Kinase Drp-1, Mutant S308d D40
authors P.Kursula, G.Shani, A.Kimchi, M.Wilmanns
compound source
Molecule: Death-Associated Protein Kinase 2
Chain: A, E, C, B, F, D, H, G
Fragment: Residues 1-320
Synonym: Dap Kinase 2, Dap- Kinase Related Protein 1, Drp- 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest-15
symmetry Space Group: P 21 21 21
R_factor 0.276 R_Free 0.296
length a length b length c angle alpha angle beta angle gamma
86.190 143.290 255.720 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.60 Å
enzyme Transferase E.C. BRENDA
F, A, E, B, H, C, D, G

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (392 Kb) [Save to disk]
  • Biological Unit Coordinates (1wmk.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (1wmk.pdb2.gz) 52 Kb
  • Biological Unit Coordinates (1wmk.pdb3.gz) 52 Kb
  • Biological Unit Coordinates (1wmk.pdb4.gz) 52 Kb
  • Biological Unit Coordinates (1wmk.pdb5.gz) 51 Kb
  • Biological Unit Coordinates (1wmk.pdb6.gz) 52 Kb
  • Biological Unit Coordinates (1wmk.pdb7.gz) 51 Kb
  • Biological Unit Coordinates (1wmk.pdb8.gz) 52 Kb
  • CSU: Contacts of Structural Units for 1WMK
  • Likely Quarternary Molecular Structure file(s) for 1WMK
  • Structure Factors (310 Kb)
  • Retrieve 1WMK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WMK from S2C, [Save to disk]
  • Re-refined 1wmk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WMK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WMK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WMK, from MSDmotif at EBI
  • Fold representative 1wmk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wmk_C] [1wmk_E] [1wmk] [1wmk_D] [1wmk_H] [1wmk_B] [1wmk_A] [1wmk_G] [1wmk_F]
  • SWISS-PROT database: [Q9UIK4]
  • Domain organization of [DAPK2_HUMAN] by SWISSPFAM
  • Domain found in 1WMK: [S_TKc ] by SMART
  • Other resources with information on 1WMK
  • Community annotation for 1WMK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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