1WMM Unknown Function date Jul 12, 2004
title Crystal Structure Of Ph1033 From Pyrococcus Horikoshii Ot3
authors M.Sugahara, N.Kunishima, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Hypothetical Upf0310 Protein Ph1033
Chain: A
Engineered: Yes
 Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 53953
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 31 2 1
R_factor 0.232 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.694 95.694 44.225 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
Primary referenceNucleant-mediated protein crystallization with the application of microporous synthetic zeolites., Sugahara M, Asada Y, Morikawa Y, Kageyama Y, Kunishima N, Acta Crystallogr D Biol Crystallogr. 2008 Jun;64(Pt 6):686-95. Epub 2008, May 14. PMID:18560157
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1wmm.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1WMM
  • Likely Quarternary Molecular Structure file(s) for 1WMM
  • Structure Factors (92 Kb)
  • Retrieve 1WMM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WMM from S2C, [Save to disk]
  • Re-refined 1wmm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1WMM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WMM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WMM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wmm_A] [1wmm]
  • SWISS-PROT database: [O58764]
  • Domain organization of [Y1033_PYRHO] by SWISSPFAM
    • Other resources with information on 1WMM
  • Community annotation for 1WMM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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