1WQV Hydrolase Hydrolase Inhibitor date Oct 02, 2004
title Human Factor Viia-Tissue Factor Complexed With Propylsulfona Thr-Met-P-Aminobenzamidine
authors S.Kadono, A.Sakamoto, Y.Kikuchi, M.Oh-Eda, N.Yabuta, T.Koga, K.Hat T.Shiraishi, M.Haramura, H.Kodama
compound source
Molecule: Coagulation Factor Vii
Chain: L
Fragment: Factor Vii Light Chain
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa;
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell: Cho

Molecule: Coagulation Factor Vii
Chain: H
Fragment: Factor Vii Heavy Chain
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa;
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell: Cho

Molecule: Tissue Factor
Chain: T
Fragment: Residues 1-218
Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm-109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk223-3
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.390 82.420 123.510 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand BGC, CA, CGU, FUC, PSM enzyme Hydrolase E.C.3.4.21.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H


L


T


Primary referenceCrystal structure of human factor VIIa/tissue factor in complex with peptide mimetic inhibitor., Kadono S, Sakamoto A, Kikuchi Y, Oh-eda M, Yabuta N, Koga T, Hattori K, Shiraishi T, Haramura M, Kodama H, Esaki T, Sato H, Watanabe Y, Itoh S, Ohta M, Kozono T, Biochem Biophys Res Commun 2004 Nov 26;324(4):1227-33. PMID:15504346
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (1wqv.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 1WQV
  • CSU: Contacts of Structural Units for 1WQV
  • Likely Quarternary Molecular Structure file(s) for 1WQV
  • Structure Factors (232 Kb)
  • Retrieve 1WQV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WQV from S2C, [Save to disk]
  • Re-refined 1wqv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WQV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WQV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WQV, from MSDmotif at EBI
  • Fold representative 1wqv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wqv] [1wqv_H] [1wqv_T] [1wqv_L]
  • SWISS-PROT database: [P08709] [P13726]
  • Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM
  • Domains found in 1WQV: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART
  • Alignments of the sequence of 1WQV with the sequences similar proteins can be viewed for 1WQV's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1WQV
  • Community annotation for 1WQV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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