1WQY Dna date Oct 07, 2004
title X-Ray Structural Analysis Of B-Dna Decamer D(Ccattaatgg)2 Cr Grown In D2o Solution
authors S.Arai, T.Chatake, T.Ohhara, K.Kurihara, I.Tanaka, N.Suzuki, Z.Fuj H.Mizuno, N.Niimura
compound source
Molecule: 5'-D(Cpcpaptptpapaptpgpg)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 32 2 1
R_factor 0.237 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.900 32.900 96.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceComplicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements., Arai S, Chatake T, Ohhara T, Kurihara K, Tanaka I, Suzuki N, Fujimoto Z, Mizuno H, Niimura N, Nucleic Acids Res 2005 May 24;33(9):3017-24. Print 2005. PMID:15914673
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1wqy.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1WQY
  • Likely Quarternary Molecular Structure file(s) for 1WQY
  • Structure Factors (114 Kb)
  • Retrieve 1WQY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WQY from S2C, [Save to disk]
  • Re-refined 1wqy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1WQY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WQY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WQY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wqy_B] [1wqy] [1wqy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1WQY
  • Community annotation for 1WQY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science