1WRF	Allergen	date	Oct 15, 2004
title	Refined Solution Structure Of Der F 2, The Major Mite Allerg Dermatophagoides Farinae
authors	S.Ichikawa, T.Takai, T.Inoue, T.Yuuki, Y.Okumura, K.Ogura, F.Inaga H.Hatanaka
compound		source
Molecule: Mite Group 2 Allergen Der F 2 Chain: A Synonym: Der F II Engineered: Yes		Organism_scientific: Dermatophagoides Farinae Organism_common: American House Dust Mite Organism_taxid: 6954 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pflt1
method	Solution NMR
related structures	by homologous chain: 1A9V, 1KTJ
Gene Ontology	Chain Function Process Component A
Primary reference	NMR study on the major mite allergen Der f 2: its refined tertiary structure, epitopes for monoclonal antibodies and characteristics shared by ML protein group members., Ichikawa S, Takai T, Inoue T, Yuuki T, Okumura Y, Ogura K, Inagaki F, Hatanaka H, J Biochem (Tokyo) 2005 Mar;137(3):255-63. PMID:15809326

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (410 Kb) [Save to disk] Biological Unit Coordinates (1wrf.pdb1.gz) 37 Kb CSU: Contacts of Structural Units for 1WRF Original NMR restraints for 1WRF from PDB Retrieve 1WRF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WRF from S2C, [Save to disk]

View 1WRF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1WRF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1WRF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wrf] [1wrf_A] SWISS-PROT database: [Q00855] Domain organization of [ALL2_DERFA] by SWISSPFAM Domain found in 1WRF: [ML ] by SMART

Other resources with information on 1WRF

Community annotation for 1WRF at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

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