1WRZ Metal Binding Protein Transferase date Oct 29, 2004
title Calmodulin Complexed With A Peptide From A Human Death-Assoc Protein Kinase
authors P.Kursula, J.Vahokoski, M.Wilmanns
compound source
Molecule: Calmodulin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet8a

Molecule: Death-Associated Protein Kinase 2
Chain: B
Fragment: Residues 302-320
Synonym: Dap Kinase 2, Dap- Kinase Related Protein 1, Drp-1
Ec: 2.7.1.37
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Homo Sapiens (Human).
symmetry Space Group: C 1 2 1
R_factor 0.224 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.070 33.760 73.870 90.00 110.04 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (1wrz.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1WRZ
  • CSU: Contacts of Structural Units for 1WRZ
  • Likely Quarternary Molecular Structure file(s) for 1WRZ
  • Structure Factors (80 Kb)
  • Retrieve 1WRZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WRZ from S2C, [Save to disk]
  • Re-refined 1wrz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WRZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WRZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WRZ, from MSDmotif at EBI
  • Fold representative 1wrz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wrz] [1wrz_A] [1wrz_B]
  • SWISS-PROT database: [P62158] [Q9UIK4]
  • Belongs to the calmodulin calcium binding protein (calmodulin) family according to TCDB.
  • Domain organization of [CALM_HUMAN] [DAPK2_HUMAN] by SWISSPFAM
  • Domain found in 1WRZ: [EFh ] by SMART
  • Other resources with information on 1WRZ
  • Community annotation for 1WRZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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