1WSR Transferase date Nov 10, 2004
title Crystal Structure Of Human T-Protein Of Glycine Cleavage Sys
authors K.Okamura-Ikeda, H.Hosaka, M.Yoshimura, E.Yamashita, S.Toma, A.Na K.Fujiwara, Y.Motokawa, H.Taniguchi
compound source
Molecule: Aminomethyltransferase
Chain: A, B
Synonym: Glycine Cleavage System T Protein, Gcvt
Ec: 2.1.2.10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gcst
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3
symmetry Space Group: P 21 21 21
R_factor 0.159 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.170 128.520 136.170 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO4 enzyme Transferase E.C.2.1.2.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • glycine decarboxylation via ...

  • Primary referenceCrystal Structure of Human T-protein of Glycine Cleavage System at 2.0A Resolution and its Implication for Understanding Non-ketotic Hyperglycinemia., Okamura-Ikeda K, Hosaka H, Yoshimura M, Yamashita E, Toma S, Nakagawa A, Fujiwara K, Motokawa Y, Taniguchi H, J Mol Biol 2005 Sep 2;351(5):1146-59. PMID:16051266
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (1wsr.pdb1.gz) 134 Kb
  • Biological Unit Coordinates (1wsr.pdb2.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 1WSR
  • CSU: Contacts of Structural Units for 1WSR
  • Likely Quarternary Molecular Structure file(s) for 1WSR
  • Structure Factors (487 Kb)
  • Retrieve 1WSR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WSR from S2C, [Save to disk]
  • Re-refined 1wsr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WSR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WSR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WSR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wsr_A] [1wsr] [1wsr_B]
  • SWISS-PROT database: [P48728]
  • Domain organization of [GCST_HUMAN] by SWISSPFAM
  • Other resources with information on 1WSR
  • Community annotation for 1WSR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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