1WSS Hydrolase Blood Clotting date Nov 10, 2004
title Human Factor Viia-Tissue Factor In Complex With Peptide-Mime Inhibitor That Has Two Charged Groups In P2 And P4
authors S.Kadono, A.Sakamoto, Y.Kikuchi, M.Oh-Eda, N.Yabuta, T.Koga, K.Hat T.Shiraishi, M.Haramura, H.Kodama, Y.Ono, T.Esaki, H.Sato, Y.Wata S.Itoh, M.Ohta, T.Kozono
compound source
Molecule: Coagulation Factor Vii
Chain: L
Fragment: Factor Vii Light Chain
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa;
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell: Cho

Molecule: Coagulation Factor Vii
Chain: H
Fragment: Factor Vii Heavy Chain
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa;
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell: Cho

Molecule: Tissue Factor
Chain: T
Fragment: Residues 1-218
Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm-109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk223-3
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.560 82.300 123.520 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 3CB, BGC, CA, CGU, FUC enzyme Hydrolase E.C.3.4.21.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H


L


T


Primary referenceStructure of human factor VIIa/tissue factor in complex with a peptide-mimetic inhibitor: high selectivity against thrombin by introducing two charged groups in P2 and P4., Kadono S, Sakamoto A, Kikuchi Y, Oh-Eda M, Yabuta N, Koga T, Hattori K, Shiraishi T, Haramura M, Kodama H, Ono Y, Esaki T, Sato H, Watanabe Y, Itoh S, Ohta M, Kozono T, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2005 Feb 1;61(Pt, 2):169-73. Epub 2005 Jan 20. PMID:16510984
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (1wss.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 1WSS
  • CSU: Contacts of Structural Units for 1WSS
  • Likely Quarternary Molecular Structure file(s) for 1WSS
  • Structure Factors (218 Kb)
  • Retrieve 1WSS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WSS from S2C, [Save to disk]
  • Re-refined 1wss structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WSS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WSS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WSS, from MSDmotif at EBI
  • Fold representative 1wss from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wss] [1wss_T] [1wss_L] [1wss_H]
  • SWISS-PROT database: [P08709] [P13726]
  • Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM
  • Domains found in 1WSS: [EGF] [EGF_CA] [GLA] [Tryp_SPc ] by SMART
  • Other resources with information on 1WSS
  • Community annotation for 1WSS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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