1WTG Hydrolase Blood Clotting date Nov 23, 2004
title Human Factor Viia-Tissue Factor Complexed With Ethylsulfonamide-D-Biphenylalanine-Gln-P-Aminobenzamidine
authors S.Kadono, S.Sakamoto, Y.Kikuchi, M.Oh-Eda, N.Yabuta, K.Kitazawa, T.Yoshihashi, T.Suzuki, T.Koga, K.Hattori, T.Shiraishi, M.Kodama H.Haramura, Y.Ono, T.Esaki, H.Sato, Y.Watanabe, S.Itoh, M.Ohta, T.Kozono
compound source
Molecule: Coagulation Factor Vii
Chain: L
Fragment: Factor Vii Light Chain
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa;
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell: Cho

Molecule: Coagulation Factor Vii
Chain: H
Fragment: Factor Vii Heavy Chain
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa;
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell: Cho

Molecule: Tissue Factor
Chain: T
Fragment: Residues 1-218
Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142 Antigen;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm-109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk223-3
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.280 82.320 123.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 3BP, BGC, CA, CGU, FUC enzyme Hydrolase E.C.3.4.21.21 BRENDA
Primary referenceNovel interactions of large P3 moiety and small P4 moiety in the binding of the peptide mimetic factor VIIa inhibitor., Kadono S, Sakamoto A, Kikuchi Y, Oh-Eda M, Yabuta N, Yoshihashi K, Kitazawa T, Suzuki T, Koga T, Hattori K, Shiraishi T, Haramura M, Kodama H, Ono Y, Esaki T, Sato H, Watanabe Y, Itoh S, Ohta M, Kozono T, Biochem Biophys Res Commun. 2005 Jan 28;326(4):859-65. PMID:15607748
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (1wtg.pdb1.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 1WTG
  • CSU: Contacts of Structural Units for 1WTG
  • Likely Quarternary Molecular Structure file(s) for 1WTG
  • Structure Factors (308 Kb)
  • Retrieve 1WTG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WTG from S2C, [Save to disk]
  • Re-refined 1wtg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WTG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WTG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WTG, from MSDmotif at EBI
  • Fold representative 1wtg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wtg_L] [1wtg_H] [1wtg_T] [1wtg]
  • SWISS-PROT database: [P08709] [P13726]
  • Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM
  • Domains found in 1WTG: [EGF] [EGF_CA] [GLA] [Tryp_SPc ] by SMART
  • Alignments of the sequence of 1WTG with the sequences similar proteins can be viewed for 1WTG's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1WTG
  • Community annotation for 1WTG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science