1WVL Structural Protein Dna date Dec 16, 2004
title Crystal Structure Of Multimeric Dna-Binding Protein Sac7d-Gc Dna Decamer
authors S.W.Wu, A.H.Wang
compound source
Molecule: 5'-D(Cpcptpaptpaptpapgpg)-3'
Chain: C, D
Engineered: Yes
Synthetic: Yes

Molecule: Dna-Binding Proteins 7a7b7d, Gcn4
Chain: A, B
Synonym: Sac7d-Gcn4 Fusion Protein
Engineered: Yes

Organism_scientific: Sulfolobus Acidocaldarius
Organism_taxid: 2285
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11a
symmetry Space Group: P 41 2 2
R_factor 0.230 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.650 58.650 186.680 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • endoribonuclease activity


  • Primary referenceDesign and characterization of a multimeric DNA binding protein using Sac7d and GCN4 as templates., Wu SW, Ko TP, Chou CC, Wang AH, Proteins 2005 Jul 18;. PMID:16028219
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1wvl.pdb1.gz) 72 Kb
  • CSU: Contacts of Structural Units for 1WVL
  • Likely Quarternary Molecular Structure file(s) for 1WVL
  • Structure Factors (100 Kb)
  • Retrieve 1WVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WVL from S2C, [Save to disk]
  • Re-refined 1wvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WVL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WVL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wvl_A] [1wvl] [1wvl_D] [1wvl_B] [1wvl_C]
  • SWISS-PROT database: [P13123]
  • Domain organization of [DN71_SULAC] by SWISSPFAM
  • Other resources with information on 1WVL
  • Community annotation for 1WVL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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