1WW1 Hydrolase date Dec 30, 2004
title Crystal Structure Of Trnase Z From Thermotoga Maritima
authors R.Ishii, S.Yokoyama, Riken Structural Genomicsproteomics Init (Rsgi)
compound source
Molecule: Trnase Z
Chain: A, B
Synonym: Hypothetical Protein Tm0864
Ec: 3.1.26.11
Engineered: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 243274
Strain: Msb8
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b
symmetry Space Group: P 21 21 2
R_factor 0.225 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.902 73.642 91.994 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ZN enzyme Hydrolase E.C.3.1.26.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the tRNA 3' processing endoribonuclease tRNase Z from Thermotoga maritima., Ishii R, Minagawa A, Takaku H, Takagi M, Nashimoto M, Yokoyama S, J Biol Chem 2005 Jan 27;. PMID:15701599
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (1ww1.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 1WW1
  • CSU: Contacts of Structural Units for 1WW1
  • Likely Quarternary Molecular Structure file(s) for 1WW1
  • Structure Factors (245 Kb)
  • Retrieve 1WW1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WW1 from S2C, [Save to disk]
  • Re-refined 1ww1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WW1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WW1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WW1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ww1] [1ww1_B] [1ww1_A]
  • SWISS-PROT database: [Q9WZW8]
  • Domain organization of [Q9WZW8_THEMA] by SWISSPFAM
  • Domain found in 1WW1: [Lactamase_B ] by SMART
  • Other resources with information on 1WW1
  • Community annotation for 1WW1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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