1WYD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL, EPE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the nondiscriminating aspartyl-tRNA synthetase from the crenarchaeon Sulfolobus tokodaii strain 7 reveals the recognition mechanism for two different tRNA anticodons., Sato Y, Maeda Y, Shimizu S, Hossain MT, Ubukata S, Suzuki K, Sekiguchi T, Takenaka A, Acta Crystallogr D Biol Crystallogr. 2007 Oct;63(Pt 10):1042-7. Epub 2007, Sep 19. PMID:17881821
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (1wyd.pdb1.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 1WYD
  • CSU: Contacts of Structural Units for 1WYD
  • Likely Quarternary Molecular Structure file(s) for 1WYD
  • Structure Factors (392 Kb)
  • Retrieve 1WYD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WYD from S2C, [Save to disk]
  • Re-refined 1wyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wyd] [1wyd_A] [1wyd_B]
  • SWISS-PROT database: [Q976I3]

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