1X03 Transferase date Mar 14, 2005
title Crystal Structure Of Endophilin Bar Domain
authors M.Masuda, S.Takeda, M.Sone, Y.Kamioka, H.Mori, N.Mochizuki
compound source
Molecule: Sh3-Containing Grb2-Like Protein 2
Chain: A
Fragment: Endophilin Bar Domain
Synonym: Endophilin A1, Sh3 Domain Protein 2a, Endophilin 1
Ec: 2.3.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p3
symmetry Space Group: I 41
R_factor 0.236 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.424 127.424 99.635 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand MSE enzyme Transferase E.C.2.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEndophilin BAR domain drives membrane curvature by two newly identified structure-based mechanisms., Masuda M, Takeda S, Sone M, Ohki T, Mori H, Kamioka Y, Mochizuki N, EMBO J. 2006 Jun 21;25(12):2889-97. Epub 2006 Jun 8. PMID:16763557
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1x03.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 1X03
  • CSU: Contacts of Structural Units for 1X03
  • Likely Quarternary Molecular Structure file(s) for 1X03
  • Structure Factors (118 Kb)
  • Retrieve 1X03 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X03 from S2C, [Save to disk]
  • Re-refined 1x03 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1X03 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X03
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1X03, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x03_A] [1x03]
  • SWISS-PROT database: [Q99962]
  • Domain organization of [SH3G2_HUMAN] by SWISSPFAM
  • Domain found in 1X03: [BAR ] by SMART
  • Other resources with information on 1X03
  • Community annotation for 1X03 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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