1X1L Structural Protein Rna date Apr 06, 2005
title Interaction Of Era,A Gtpase Protein, With The 3'Minor Domain Of The 16s Rrna Within The Thermus Thermophilus 30s Subunit.
authors M.R.Sharma, C.Barat, R.K.Agrawal
compound source
Molecule: Rna (130-Mer)
Chain: A
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Gtp-Binding Protein Era
Chain: X

Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 13.50 Å
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceInteraction of Era with the 30S ribosomal subunit implications for 30S subunit assembly., Sharma MR, Barat C, Wilson DN, Booth TM, Kawazoe M, Hori-Takemoto C, Shirouzu M, Yokoyama S, Fucini P, Agrawal RK, Mol Cell 2005 Apr 29;18(3):319-29. PMID:15866174
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1x1l.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1X1L
  • Likely Quarternary Molecular Structure file(s) for 1X1L
  • Retrieve 1X1L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X1L from S2C, [Save to disk]
  • View 1X1L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X1L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1X1L, from MSDmotif at EBI
  • Fold representative 1x1l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x1l_A] [1x1l] [1x1l_X]
  • SWISS-PROT database: [P06616]
  • Domain organization of [ERA_ECOLI] by SWISSPFAM
  • Other resources with information on 1X1L
  • Community annotation for 1X1L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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