1X3B Cell Adhesion date May 02, 2005
title Solution Structure Of The Fas1 Domain Of Human Transforming Growth Factor-Beta Induced Protein Ig-H3
authors M.Yoneyama, T.Tomizawa, N.Tochio, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Transforming Growth Factor-Beta Induced Protein Ig-H3;
Chain: A
Fragment: Fas1 Domain
Synonym: Beta Ig-H3, Kerato-Epithelin, Rgd-Containing Collagen Associated Protein, Rgd-Cap;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfbi
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040524-06
Other_details: Cell-Free Protein Synthesis
methodSolution NMR

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (729 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1X3B
  • Retrieve 1X3B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X3B from S2C, [Save to disk]
  • View 1X3B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X3B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1X3B, from MSDmotif at EBI
  • Fold representative 1x3b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x3b_A] [1x3b]
  • SWISS-PROT database: [Q15582]
  • Domain organization of [BGH3_HUMAN] by SWISSPFAM
  • Domain found in 1X3B: [FAS1 ] by SMART
  • Other resources with information on 1X3B
  • Community annotation for 1X3B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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