1X5F Cell Adhesion date May 15, 2005
title The Solution Structure Of The First Fibronectin Type III Domain Of Human Neogenin
authors N.Tochio, A.Sasagawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Neogenin
Chain: A
Fragment: Fn3 Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Neo1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P041213-02
Other_details: Cell-Free Protein Synthesis
methodSolution NMR

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (595 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1X5F
  • Original NMR restraints for 1X5F from PDB
  • Retrieve 1X5F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X5F from S2C, [Save to disk]
  • View 1X5F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X5F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1X5F, from MSDmotif at EBI
  • Fold representative 1x5f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x5f] [1x5f_A]
  • SWISS-PROT database: [Q92859]
  • Domain organization of [NEO1_HUMAN] by SWISSPFAM
  • Domain found in 1X5F: [FN3 ] by SMART
  • Other resources with information on 1X5F
  • Community annotation for 1X5F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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