1X5J Cell Adhesion date May 15, 2005
title The Solution Structure Of The Fifth Fibronectin Type III Domain Of Human Neogenin
authors N.Tochio, A.Sasagawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Neogenin
Chain: A
Fragment: Fn3 Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Neo1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P041213-06
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (578 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1X5J
  • Original NMR restraints for 1X5J from PDB
  • Retrieve 1X5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X5J from S2C, [Save to disk]
  • View 1X5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X5J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1X5J, from MSDmotif at EBI
  • Fold representative 1x5j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x5j_A] [1x5j]
  • SWISS-PROT database: [Q92859]
  • Domain organization of [NEO1_HUMAN] by SWISSPFAM
  • Domain found in 1X5J: [FN3 ] by SMART
  • Alignments of the sequence of 1X5J with the sequences similar proteins can be viewed for 1X5J's classification [NEO1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NEO1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1X5J
  • Community annotation for 1X5J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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