1X5K Cell Adhesion date May 15, 2005
title The Solution Structure Of The Sixth Fibronectin Type III Domain Of Human Neogenin
authors N.Tochio, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Neogenin
Chain: A
Fragment: Fn3 Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Neo1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P041213-07
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
note 1X5K is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (626 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1X5K
  • Original NMR restraints for 1X5K from PDB
  • Retrieve 1X5K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X5K from S2C, [Save to disk]
  • View 1X5K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X5K
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1X5K, from MSDmotif at EBI
  • Fold representative 1x5k from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x5k_A] [1x5k]
  • SWISS-PROT database: [Q92859]
  • Domain organization of [NEO1_HUMAN] by SWISSPFAM
  • Domain found in 1X5K: [FN3 ] by SMART
  • Other resources with information on 1X5K
  • Community annotation for 1X5K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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