1X5L Signaling Protein date May 16, 2005
title Solution Structure Of The Second Fn3 Domain Of Eph Receptor
authors X.R.Qin, T.Nagashima, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Ephrin Type-A Receptor 8
Chain: A
Fragment: Fn3 Domain
Synonym: Tyrosine-Protein Kinase Receptor Eek, Eph-And Elk- Kinase, Hek3;
Ec: 2.7.1.112
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Fh16961
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040705-14
Other_details: Cell Free Protein Synthesis
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.1.112 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (555 Kb) [Save to disk]
  • Biological Unit Coordinates (1x5l.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1X5L
  • Original NMR restraints for 1X5L from PDB
  • Retrieve 1X5L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X5L from S2C, [Save to disk]
    • View 1X5L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1X5L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1X5L, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x5l] [1x5l_A]
  • SWISS-PROT database: [P29322]
  • Domain organization of [EPHA8_HUMAN] by SWISSPFAM
  • Domain found in 1X5L: [FN3 ] by SMART
    • Other resources with information on 1X5L
  • Community annotation for 1X5L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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