1X5N Structural Protein date May 16, 2005
title Solution Structure Of The Second Pdz Domain Of Harmonin Protein
authors X.R.Qin, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Harmonin
Chain: A
Fragment: Pdz Domain
Synonym: Usher Syndrome 1c Protein, Autoimmune Enteropathy- Related Antigen Aie-75, Pdz-73 Protein, Antigen Ny-Co- 38ny-Co-37;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ush1c; Aie75
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040510-04
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (555 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1X5N
  • Original NMR restraints for 1X5N from PDB
  • Retrieve 1X5N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X5N from S2C, [Save to disk]
  • View 1X5N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X5N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1X5N, from MSDmotif at EBI
  • Fold representative 1x5n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x5n] [1x5n_A]
  • SWISS-PROT database: [Q9Y6N9]
  • Domain organization of [USH1C_HUMAN] by SWISSPFAM
  • Domain found in 1X5N: [PDZ ] by SMART
  • Other resources with information on 1X5N
  • Community annotation for 1X5N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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