1X5T Rna Binding Protein date May 16, 2005
title Solution Structure Of The Second Rrm Domain In Splicing Fact
authors A.Sato, K.Kuwasako, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terad S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Splicing Factor 3b Subunit 4
Chain: A
Fragment: Rrm Domain
Synonym: Spliceosome Associated Protein 49, Sap 49, Sf3b50, Splicing Factor Sf3b 49 Kda Subunit;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sf3b4, Sap49
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040517-06
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (470 Kb) [Save to disk]
  • Biological Unit Coordinates (1x5t.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 1X5T
  • Retrieve 1X5T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X5T from S2C, [Save to disk]
  • View 1X5T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X5T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1X5T, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x5t_A] [1x5t]
  • SWISS-PROT database: [Q15427]
  • Domain organization of [SF3B4_HUMAN] by SWISSPFAM
  • Domain found in 1X5T: [RRM ] by SMART
  • Other resources with information on 1X5T
  • Community annotation for 1X5T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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