5GVQ Rna Binding Protein date Sep 06, 2016
title Solution Structure Of The First Rrm Domain Of Human Spliceos Protein Sf3b49
authors K.Kuwasako, N.Nameki, K.Tsuda, M.Takahashi, A.Sato, N.Tochio, M.In T.Terada, T.Kigawa, N.Kobayashi, M.Shirouzu, T.Ito, T.Sakamoto, K.Wakamatsu, P.Guntert, S.Takahashi, S.Yokoyama, Y.Muto, Riken S Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Splicing Factor 3b Subunit 4
Chain: A
Synonym: Spliceosomal Protein Sf3b49, Pre-Mrna-Splicing Fac 49 Kda Subunit,Spliceosome-Associated Protein 49,Sap 49;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sf3b4, Sap49
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
note 5GVQ supersedes 1X5U
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the first RNA recognition motif domain of human spliceosomal protein SF3b49 and its mode of interaction with a SF3b145 fragment., Kuwasako K, Nameki N, Tsuda K, Takahashi M, Sato A, Tochio N, Inoue M, Terada T, Kigawa T, Kobayashi N, Shirouzu M, Ito T, Sakamoto T, Wakamatsu K, Guntert P, Takahashi S, Yokoyama S, Muto Y, Protein Sci. 2017 Feb;26(2):280-291. doi: 10.1002/pro.3080. Epub 2016 Nov 27. PMID:27862552
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (531 Kb) [Save to disk]
  • Biological Unit Coordinates (5gvq.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 5GVQ
  • Original NMR restraints for 5GVQ from PDB
  • Retrieve 5GVQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GVQ from S2C, [Save to disk]
  • View 5GVQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GVQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gvq] [5gvq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5GVQ
  • Community annotation for 5GVQ at PDBWiki (http://pdbwiki.org)

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